Exome Projects QC Browser
CONTRACTS
Search for the value:
Column to Filter:
nn
Sample.ID
VCF.lines
VCF.filtered
Total.Reads
Duplicates
Aligned.Proportion
Enrichment..
Insert.Size.Median
Targets.coverage.breadth
Total.Reads.Mapped
Properly.Mapped.Reads
Proportion.Properly.Mapped.Reads
Library.Size
Target.Callability....
Transition.Transversion.ratio
Proportion.Pairs.Mapped
Read.Pairs.Mapped
Targets.with.over.10.All.
Targets.with.over.10.no.PCR.
Targets.with.over.20.All.
Targets.with.over.20.no.PCR.
Targets.with.over.50.All.
Targets.with.over.50.no.PCR.
Transition..Transversion.ratio
Unique.Reads
Contamination
Het.Hom.ratio
SexPred
contract
flowcell
rundate
contract_status
lanes
additional_bioinformatics
requested_organisation
requested_department
approval_timestamp
analyst
eesign
status
active
software
r_lastmod_date
sequencing_complete_timestamp
first_read_length
second_read_length
Median.Coverage
Mean.Coverage
year
Filter Table
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Exon runs by years
Contracts Pie Chart from the filtered table
Flowcell Pie Chart from the filtered table
Select Y-axis:
nn
Sample.ID
VCF.lines
VCF.filtered
Total.Reads
Duplicates
Aligned.Proportion
Enrichment..
Insert.Size.Median
Targets.coverage.breadth
Total.Reads.Mapped
Properly.Mapped.Reads
Proportion.Properly.Mapped.Reads
Library.Size
Target.Callability....
Transition.Transversion.ratio
Proportion.Pairs.Mapped
Read.Pairs.Mapped
Targets.with.over.10.All.
Targets.with.over.10.no.PCR.
Targets.with.over.20.All.
Targets.with.over.20.no.PCR.
Targets.with.over.50.All.
Targets.with.over.50.no.PCR.
Transition..Transversion.ratio
Unique.Reads
Contamination
Het.Hom.ratio
SexPred
contract
flowcell
rundate
contract_status
lanes
additional_bioinformatics
requested_organisation
requested_department
approval_timestamp
analyst
eesign
status
active
software
r_lastmod_date
sequencing_complete_timestamp
first_read_length
second_read_length
Median.Coverage
Mean.Coverage
year
Select X-axis:
nn
Sample.ID
VCF.lines
VCF.filtered
Total.Reads
Duplicates
Aligned.Proportion
Enrichment..
Insert.Size.Median
Targets.coverage.breadth
Total.Reads.Mapped
Properly.Mapped.Reads
Proportion.Properly.Mapped.Reads
Library.Size
Target.Callability....
Transition.Transversion.ratio
Proportion.Pairs.Mapped
Read.Pairs.Mapped
Targets.with.over.10.All.
Targets.with.over.10.no.PCR.
Targets.with.over.20.All.
Targets.with.over.20.no.PCR.
Targets.with.over.50.All.
Targets.with.over.50.no.PCR.
Transition..Transversion.ratio
Unique.Reads
Contamination
Het.Hom.ratio
SexPred
contract
flowcell
rundate
contract_status
lanes
additional_bioinformatics
requested_organisation
requested_department
approval_timestamp
analyst
eesign
status
active
software
r_lastmod_date
sequencing_complete_timestamp
first_read_length
second_read_length
Median.Coverage
Mean.Coverage
year
Select dot size:
None
nn
Sample.ID
VCF.lines
VCF.filtered
Total.Reads
Duplicates
Aligned.Proportion
Enrichment..
Insert.Size.Median
Targets.coverage.breadth
Total.Reads.Mapped
Properly.Mapped.Reads
Proportion.Properly.Mapped.Reads
Library.Size
Target.Callability....
Transition.Transversion.ratio
Proportion.Pairs.Mapped
Read.Pairs.Mapped
Targets.with.over.10.All.
Targets.with.over.10.no.PCR.
Targets.with.over.20.All.
Targets.with.over.20.no.PCR.
Targets.with.over.50.All.
Targets.with.over.50.no.PCR.
Transition..Transversion.ratio
Unique.Reads
Contamination
Het.Hom.ratio
SexPred
contract
flowcell
rundate
contract_status
lanes
additional_bioinformatics
requested_organisation
requested_department
approval_timestamp
analyst
eesign
status
active
software
r_lastmod_date
sequencing_complete_timestamp
first_read_length
second_read_length
Median.Coverage
Mean.Coverage
year
Filtered Table
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UMAP: Number of Neighbors
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Selected vs unselected samples
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